ML Scientist I / Ii, Foundation Models for Life Sciences

Lila Sciences Lila Sciences · AI Frontier · San Francisco, CA · AI

Research Scientist role focused on developing and evaluating foundation models for life sciences applications, including biological sequence design, structure prediction, and multimodal scientific reasoning. The role involves end-to-end ML process contribution, from data generation strategy to feedback loops, and collaboration with experimental scientists. Requires a strong foundation in generative models and ML frameworks, with a PhD or equivalent research experience.

What you'd actually do

  1. Contribute to research on foundation models for life science applications, including biological sequence design, structure prediction, and multimodal scientific reasoning
  2. Design, train, and evaluate generative models on biological and chemical data, incorporating domain-specific constraints and priors
  3. Be part of the end-to-end ML process within Lila's "Lab-in-the-Loop" lifecycle: support data generation strategy, build pipeline models, and help design feedback loops where experimental results improve model performance
  4. Translate biological questions into well-defined ML problems and interpret model outputs in collaboration with wet-lab scientists and computational biologists
  5. Support research quality and methodology standards within the foundation models program

Skills

Required

  • generative model architectures
  • model training
  • model development
  • model evaluation
  • PyTorch
  • JAX
  • TensorFlow
  • GPU-based training

Nice to have

  • computational protein design
  • molecular structure prediction
  • active learning loops
  • closed-loop experimental workflows
  • open-source ML tools
  • distributed training infrastructure
  • AI for Science publications

What the JD emphasized

  • PhD in Computer Science, Machine Learning, Computational Biology, or a related quantitative field (or Master's with equivalent research experience)
  • Strong foundation in generative model architectures and training
  • Ability to formulate and execute research independently, from problem definition through experimentation
  • Familiarity with at least one life science domain
  • Experience collaborating with experimental scientists or working with biological/chemical data
  • Proficiency in ML frameworks (PyTorch, JAX, or TensorFlow)
  • High-impact publications or open‑source contributions in AI for Science in relevant venues

Other signals

  • foundation models
  • generative models
  • life sciences
  • scientific discovery
  • closed-loop discovery engine